Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDVRLINGIALAFEGDAVYSLYIRRHLIMQGFTKPNQLHRKATQYVSANAQALLINAMLEENILTDEEQLIYKRGRNANSHTKAKNADIITYRMSTGFEALMGYLDMTGQIKRLETLIQWCIETIEK
1U61 Chain:A ((2-126))
-IDAKQLNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANSGTVPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAIAVLEE
General information:
TITO was launched using:
RESULT:
Template:
1U61.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28562 for 904 contacts (-31.6/contact) +
2D Compatibility (PS) -13123 + (NN) -4633 + (LL) 208
1D Compatibility (HY) 0 + (ID) 500
Total energy: -46610.0 ( -51.56 by residue)
QMean score : 0.255
(partial model without unconserved sides chains):
PDB file :
Tito_1U61.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U61-query.scw
PDB file :
Tito_Scwrl_1U61.pdb
: