Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDKQFKEESSDLVYGLHAVTESLRANTGNKLYLQDDLRGKNVDKVKALATEKKVSISWTPKKILSDMTNGGVHQGFVLKVSEFAYADLSEIMTKAENEENPLILILDGLTDPHNLGSILRTADATNVTGIIIPKHRSVGVTPV-VSKTSTGAVEHVPIARVTNLSQTLDTLKDKDFWIFGTDMNGTPSHK--WNTKGKLALVIGNEGKGISHNIKKQVDEMITIPMNGHVQSLNASVAAAILMYEVFRNRL
3GYQ Chain:A ((121-262))
-------------------------------------------------------------------------------------------------------VVVLDGVKIVGNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVV-LSGREEAIAFIRDSGMQLMTLKADGDISVKELGDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESLNVSVSLGIALHERIDRNL
General information:
TITO was launched using:
RESULT:
Template:
3GYQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100522 for 1087 contacts (-92.5/contact) +
2D Compatibility (PS) -15134 + (NN) -6824 + (LL) 6824
1D Compatibility (HY) -8400 + (ID) 1850
Total energy: -125906.0 ( -115.83 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_3GYQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GYQ-query.scw
PDB file :
Tito_Scwrl_3GYQ.pdb
: