Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKECRDFYRQIQHTYNDIAVREDAVLSSILLSASNGLIKTSDVPRVAYELTQQLENNE---------IEKSFESLATVKELKKSAKKL-SERYEQNKVTTGLLSKVFGNH
1TDP Chain:A ((1-111))
MDIKSQTLYLNLSEAYKDPEVKANEFLSKLVVQCAGKLTASNSENSYIEVISLLSRGISSYYLSHKRIIPSSMLTIYTQIQKDIKNGNIDTEKLRKYEIAKGLMSVPYIYF
General information:
TITO was launched using:
RESULT:
Template:
1TDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11632 for 787 contacts (14.8/contact) +
2D Compatibility (PS) -10779 + (NN) -3441 + (LL) 0
1D Compatibility (HY) -5600 + (ID) 750
Total energy: -8938.0 ( -11.36 by residue)
QMean score : 0.287
(partial model without unconserved sides chains):
PDB file :
Tito_1TDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TDP-query.scw
PDB file :
Tito_Scwrl_1TDP.pdb
: