Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MFLSIMAGVIAFVLTVIAIPRFIKFYQLKKIGGQQMHEDVKQHLAKAGTPTMGGTVFLIVALLVSLIFSIILSKENSGNLGATFGILSVVLIYGIIGFLDDFLKIFKQINEGLTPKQKMSLQLIAGLIFYFVHVLPSGTSAINIFGFYLEVGYLY--AFFVLFWVVGFSNAVNLTDGIDGLASISVVISLITYGIIAYNQTQFDILLIIVIMIGALLGFFVFNHKPAKVFMGDVGSLALGAMLAAISIALRQEWTLLFIGFVYVFETSSVMLQVAYFKYTKKKTGVGKRIFRMTPFHHHLELGGV-SGKGNKW--SEWKVDAFLWA------IGIFMSAITLAILYL |
| 4LDV Chain:A ((16-356)) | SDALCRELWHACAGPLVTLPREGERVYYFPEGHMEQL--EASMHQGLEQQMPSFNLPSK-----------ILCKVINIQRRAETDEVYAQITLLPELDQSEPTSPDAPVQETVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSSK-------------KLVAGDAFIFLRGENEE-LRVGVRRHMPSSV----ISSHSMHIGVLATAAHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFKRFSGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPLN- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -255952 for 2226 contacts (-115.0/contact) +
2D Compatibility (PS) -32487 + (NN) -4062 + (LL) 3132
1D Compatibility (HY) 4000 + (ID) 2250
Total energy: -287619.0 ( -129.21 by residue)
QMean score : 0.094
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