Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFKKIILSIATIAATASLAVSVQASEKVELKVATDSDTAPFTY-QKDGKFKGYDVDVVKAVFKGSKYKVTFKTVPFDTISTGIDAGKFDLSANDFSYNKERAEKYLFSDPISRSNYAVVGKKGSHYKSLSDLSGKSTEVLSGVNYAQVLENWNKNHPNKKPIKIKYVSGTTGVTSRLKNIESGKIDFILYDAISSDYIVKDQSLN--LSVSPLKGKIGNNKDGLEYLLLPKDKKGKTLQKFINKRIKVLKENGTLARLSKQYFGGDYVSNIDK |
3VV5 Chain:A ((37-256)) | ----------------------------EIRIGTEGAFPPFNYFDERNQLTGFEVDLGNAIAERLGLKPRWIAQSFDTLLIQLNQGRFDFVIASHGITEERARAVDFTNPHYCTGGVIVSRKGGP-RTAKDLQGKVVGVQVGTTYMEAAQ--------KIP-GIKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQVGELVFQ--------ERVAMAVAKGNKSLLDALNRALAELMQDGTYARISQKWFGEDVRCK--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VV5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -49647 for 1820 contacts (-27.3/contact) +
2D Compatibility (PS) -23886 + (NN) -9529 + (LL) 3576
1D Compatibility (HY) -9600 + (ID) 3000
Total energy: -92086.0 ( -50.60 by residue)
QMean score : 0.429
|
|
|