Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKKIIAVDLDGTLLH-NNNTISDYTADTLRKVQAQGHKVIITTGRPYRMA--LAHYLRLDLKTPMINFNGALTHIPEKKWAFERSATIDKKLLLETLNLSDAIQADFIASEYRKNFYITMDNRDKINPQLFGVNEITDKMALDVTKITRNPNALLMQTRHKDKYELAKELRQHFNHEL-------EVDSWGGPLNILEFSPKGVNKAYALKHLLKSLNLSQENLIAFGDEHNDTEMLAFAHTGYAMKNANPTLLPYADQQIQWTNEEDGVAKTLEKLLL |
| 2RAR Chain:A ((1-255)) | MTKALF-FDIAGTLVSFETHRIPSSTIEALEAAHAKGLKIFIATGRPKAIINNLSELQDRNLIDGYITMNGAYCFVGEE--VIYKSAIPQEEV---------KAMAAFCEKKGVPCIFVEEHNISVCQP-----NEMVKKIFYDFLHVNVIPTVSFEEASNKEVIQMTPFITEEEEKEVLPSIPTCEIGRWYPAFA--DVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKAAAD-YVTAPIDEDGISKAMKHFGI |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2RAR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -33831 for 2153 contacts (-15.7/contact) +
2D Compatibility (PS) -25866 + (NN) -8801 + (LL) 1988
1D Compatibility (HY) -15600 + (ID) 3100
Total energy: -85210.0 ( -39.58 by residue)
QMean score : 0.369
|
|
|