Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVKLFAIHLFFIVISFGIKYYHLQGPNLIWNMTLALIALDFAYLTSLFKKKILIGLFALAWFFFYPNTFYMLTDIIHMHFVGDVLYNKTNLILYILYVSSILFGFLSGIESFSVIMRKFRISNIFLRWGIIGIVSFVSSFGIHIGRYARLNSWDILTKPQVVINELLAVPSRDSFHFILGFTFLQVLCLIFMDYSAGKKLEK
4PJ0 Chain:T ((1-29))
-----------------------------------------METITYVFIFACIIALFFFAIFFREPPRINLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWIC
General information:
TITO was launched using:
RESULT:
Template:
4PJ0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10558 for 161 contacts (-65.6/contact) +
2D Compatibility (PS) -4981 + (NN) -2455 + (LL) 4260
1D Compatibility (HY) -4800 + (ID) 500
Total energy: -19034.0 ( -118.22 by residue)
QMean score : -0.094
(partial model without unconserved sides chains):
PDB file :
Tito_4PJ0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PJ0-query.scw
PDB file :
Tito_Scwrl_4PJ0.pdb
: