Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTYRVKSDKDFQMIFSRGKNVANRKFVIYY---LEKEQKHFRVGISVSKKLGNAVVRNAIKRKIRHVLLSQKTALQDYD---FVVIA---RKGVEELNYQALEKNLIHVLKIAGLI
4HWA Chain:A ((25-105))
-----------------------------LSYAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQ-------TASVIAVLGAAGLA
General information:
TITO was launched using:
RESULT:
Template:
4HWA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6109 for 383 contacts (-16.0/contact) +
2D Compatibility (PS) -7416 + (NN) -2125 + (LL) 2876
1D Compatibility (HY) -6800 + (ID) 1300
Total energy: -20874.0 ( -54.50 by residue)
QMean score : 0.234
(partial model without unconserved sides chains):
PDB file :
Tito_4HWA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HWA-query.scw
PDB file :
Tito_Scwrl_4HWA.pdb
: