Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYEQEFLKDFEEWLQSQISINQMAMDSAKKVLEEDKDERAADAYIRYESKLDAYRFLQGKFNNYHNQKSFHDLPDGLFGQRHY
2K48 Chain:A ((47-93))
--------------HEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQN---RRAAVSTLETKLGELKRQLADLVAAQKL------
General information:
TITO was launched using:
RESULT:
Template:
2K48.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2987 for 279 contacts (-10.7/contact) +
2D Compatibility (PS) -5381 + (NN) -4118 + (LL) 1772
1D Compatibility (HY) 0 + (ID) 450
Total energy: -11164.0 ( -40.01 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_2K48.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K48-query.scw
PDB file :
Tito_Scwrl_2K48.pdb
: