Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQILEDYDGRALPKLETDRLILRQRTVGDVPAMFDYVCLEEVAYPAGLSPIASLEDEYDYFENRYYQNLEKAKLPSGYGITVKGSDRIIGSCAFNH-RREDDVFEIGYLLHPDYWG-----HGYMTEAVAALIEVGFTLLNLHKIEIRCYDYNKQSQRVAEKLGFTLEATIRDRKDNQGNRCVNLIYGLLRSEWE
3TCV Chain:A ((73-192))
----------------------------------------------------------------------KSDDPLFFAVIDKASGKVAGRQALMRIDPANGVIEIGSI----YWGPLISRRPAATEAQFLFMQYVFDVLGYRRYEWECHNENGPSRRAAERFGFRFEGIFRQHMVVKGRNRDTAWFSVLDSEWP
General information:
TITO was launched using:
RESULT:
Template:
3TCV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56451 for 751 contacts (-75.2/contact) +
2D Compatibility (PS) -11996 + (NN) -2199 + (LL) 5104
1D Compatibility (HY) -6000 + (ID) 1700
Total energy: -73242.0 ( -97.53 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_3TCV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TCV-query.scw
PDB file :
Tito_Scwrl_3TCV.pdb
: