Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQEKLKSKLDQAKGGAKEGFGKITGDKELEAKGFIEKTIAKGKELA-----DDAKDAVEGAVDAVKEKLK
1AKW Chain:A ((77-112))
-----------------------------------LEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLK
General information:
TITO was launched using:
RESULT:
Template:
1AKW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -336 for 114 contacts (-2.9/contact) +
2D Compatibility (PS) -2953 + (NN) 850 + (LL) 1616
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -3573.0 ( -31.34 by residue)
QMean score : 0.231
(partial model without unconserved sides chains):
PDB file :
Tito_1AKW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AKW-query.scw
PDB file :
Tito_Scwrl_1AKW.pdb
: