Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLVVDDEPVARNELIYLLNKYDSNLVIAEAHDMATALAILLRETFDVALLDIHLRDDSGLQLAEYINKMPK----PPLLIFATAYDQYAIQAFEHDARDYLLKPYDFDRLKQAMDRVKGALSTSTIIESVTSGPLFKQQYPLTVEDRIYLVSADDILLIEAMQGKLIIQTPDKNYEIDGSLQQWQDKLPSSQFVRVHRSYIVNINAIKTIEPWFNQTLQLHLCNKITVPVSRANVKPLKQMLGIST
4JP1 Chain:A ((5-122))
MKILIVDDFSTMRRIVKNLLRDLGFNNT-QEADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE-------------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4JP1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92148 for 855 contacts (-107.8/contact) +
2D Compatibility (PS) -12544 + (NN) -8409 + (LL) 9784
1D Compatibility (HY) -6400 + (ID) 1800
Total energy: -111517.0 ( -130.43 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_4JP1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JP1-query.scw
PDB file :
Tito_Scwrl_4JP1.pdb
: