Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METNIYGDYGRYLPLILEDFSQRIQLENDKAKVETG-YKLYEHIIGRIKTSDSMIEKCRRKQLPVTVDSALKAIRDSIGVRIICGFVNDIYQIVERIKSFDDCRIVVEKDYIQHVKPNGYRSYHVILEIDTPYPDCLGNSEGKYYIEIQLRTIAQDSWASL--EHQMKYKHDIENPERIVRELKRCADEMASVDLTMQTIRQLIESGTKKE
1VJ7 Chain:A ((197-371))
--ETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGDVYGRPKHIYSIYRKMRDKKKRF------DQIFDLIAIRCVMETQSDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGP-------KG-P----IEIQIRTKEMHQVAEYGVAA------------------NWIKELVEL-------------------
General information:
TITO was launched using:
RESULT:
Template:
1VJ7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43598 for 1022 contacts (-42.7/contact) +
2D Compatibility (PS) -16042 + (NN) -1781 + (LL) 4140
1D Compatibility (HY) -6400 + (ID) 1800
Total energy: -65481.0 ( -64.07 by residue)
QMean score : 0.339
(partial model without unconserved sides chains):
PDB file :
Tito_1VJ7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VJ7-query.scw
PDB file :
Tito_Scwrl_1VJ7.pdb
: