Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLLYIFEKNIILRKILITFSLIIIFLLGRYVPIPGVLISAYKGQDNNFATLYSTVTGGNLSQVG-VFSLGIGPMMTTMILLRLFTIGKYSSGVSQKVQQFRQNVVML-----VIAIIQGLAIAISFQYHNGFSLTKLLLATMILVT---GAYIISWIGNLNAEYGFG-GMTILVVVG----MLVGQFNNIPLIFE----LFQDGYQLAIILFLLWTLVAMYLMITFERSEYRIPVMRTSIHN-------RLVDDAYMPIKVNASGGMAFMYVYTLLMFPQYIIILLRSIFPTNPDITSY--NDYFSLSSIQG----VVIYMILMLVLSVAFTF-----VNIDPTKISEAMRESGDFIPNYRPG---KETQSYLSKICYLFGTFSGF------FMAFLGGVPLLFALGNDDLRTVSSMTGIFMMITGMSFMILDEFQVIRIRKQYTSVFENEEN |
| 3DKN Chain:A ((58-406)) | ----------------------------------------------------WQTITA---SRIGTLITLGIGPIVTAGIIMQLLV----GSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFGILTPLLAFLVIIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPV-ILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGG-------GTGVLLTVSIVYRMYEQLLREKVSELHPAIAKL-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DKN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195457 for 2125 contacts (-92.0/contact) +
2D Compatibility (PS) -31214 + (NN) -10716 + (LL) 7164
1D Compatibility (HY) -32800 + (ID) 3900
Total energy: -266923.0 ( -125.61 by residue)
QMean score : 0.172
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