Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIFDKSMKLEHVAYDIRGPVLEEADRMRANGEKILRLNTGNPAAFGFEAPD---EVIRDLITNARESEGYSDSKGIFSARKAVMQYYQLQN-IHVDMDDIYIVNGVSEGISMSMQALLDNDDEVLVPMPDYPLWTACVSLAGGNAVHYICDEEANWYPDIDDIKSKITSKTKAIVLINPNNPTGAVYPREILQEIVDIARQNDLIIFSDEVYDRLVMDGMEHIPIASIAEDIFTVTLSGLSKSHRICGFRVGWMVLSGPRQHVKGYIEGLNMLANMRLCSNVLAQQVIQTSLGGQQSIDSMLLPGGRIY-EQRNYIHKAINEIPGLSAVKPNAGLYLFPKIDTDMYRIDNDEEFVLNFLKQEKVLLTHGRGFNMNTADHFRIVYLPRVDELTELQEKMARFLSQYKR |
| 1GC3 Chain:A ((26-382)) | ---------------------------LRRQGVDLVALTAGEP---DFDTPEHVKEAARRALAQGKTK--YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRVAPE-HTLTVNGAAKAFAMTGWRIGYAC--GPKEVIKAMA---SVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVL----MDTSPIAPDEVRAAERLLEAGVAVVPGTDF--AAFGHVRLSYATSEENLRKALERFARVL----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1GC3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -215609 for 3110 contacts (-69.3/contact) +
2D Compatibility (PS) -38632 + (NN) -17355 + (LL) 3660
1D Compatibility (HY) -17200 + (ID) 5100
Total energy: -290236.0 ( -93.32 by residue)
QMean score : 0.533
|
|
|