Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MISSYHRPTRALIDLEAIANNVKSVQEHIPSDKKTFAVVKANAYGHGAVEVSKYIES-IVDGFCVSNLDEAIELRQAGIVKMILVLGVVMPEQVILAKNENITLTVASLEWLRLCQTSAVDLSGLE-VHIKVDSGMGRIGVRQLDEGNKLISELGE-SGASVKGIFTHFATADEADNCKFNQQLTFFKDFISGLDNCP---DLVHASNSATSLWHSETIFNAVRLGVVMYGLNPSGTDLDLPYPINPALSLESELVHVKQLHDGSQVGYGATYQVTGDEFVGTVPIGYADGWTRDMQGFSVIVNGELCEIIGRVSMDQMTIRLPQKYTI--GTKVTLIGQQGSCNITTTDVAQKRQTINYEVLCLLSDRIPRYY |
4LUT Chain:A ((7-370)) | -------PTWAEINLDNLRFNLNNIKNLLEEDIKICGVIKADAYGHGAVEVAKLLEKEKVDYLAVARTAEGIELRQNGITLPILNLGYTPDEAFEDSIKNKITMTVYSLETAQKINEIAKSLGEKACVHVKID-------FQPNEESVQEIIELNKLEYIDLEGMFTHFATADEVSKEYTYKQANNYKFMSDKLDEAGVKIAIKHVSNSAAIMDCPDLRLNMVRAGIILYGHYPSDDVFKDRLELRPAMKLKSKIGHIKQVEPGVGISYGLKYTTTGKETIATVPIGYADGFTRIQKNPKVLIKGEVFDVVGRICMDQIMVRIDKDIDIKVGDEVILFGE---GEVTAERIAKDLGTINYEVLCMISRRVDRVY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LUT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -249461 for 2896 contacts (-86.1/contact) +
2D Compatibility (PS) -37172 + (NN) -5461 + (LL) 480
1D Compatibility (HY) -24400 + (ID) 6750
Total energy: -322764.0 ( -111.45 by residue)
QMean score : 0.477
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