Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLRRSERMVVISNYLINNPYTLTSLNTFASKYGAAKSSISEDIAIIKKAFEQAQIGDIKTVTGASGGVIFTPTIAEAEAKEIVEELRQRLSENDRILPGGYIYLSDLLSTPKMLQSIGRIVANAYRGQKIDAVMTVATKGVPLANAVANVLDVPFVIVRRDLKITEGSTVSVNYASGSSGRIEKMFLSKRSLKPNSRVLIVDDFLKGGGTVSGMISLLSEFDSTLVGVAVFAENAQEQREKMAYKSLLRVSEIDVKNNRVSVEAGNIFD
4MB6 Chain:A ((35-157))
--------------------------------------------------------------------------------------------------------VTSLLENPKAYSASIELLSEHYSESGVTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPR-ETISESYELEYG--TDTLEIHTDSIQPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVVHAAFIINLPELGGEARLTQQGIHCYSLVSFD------------
General information:
TITO was launched using:
RESULT:
Template:
4MB6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106623 for 910 contacts (-117.2/contact) +
2D Compatibility (PS) -13471 + (NN) -5224 + (LL) 8764
1D Compatibility (HY) -10400 + (ID) 1650
Total energy: -128604.0 ( -141.32 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_4MB6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MB6-query.scw
PDB file :
Tito_Scwrl_4MB6.pdb
: