Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNEKLEQIEQLLQTLIKLIQIKEQNIPLKIIQQRELLK-QLNISPNTLKTWEQKGLKRLEPPIEGTRTVFYLLDDIINFLQS
3V20 Chain:A ((122-167))
---EKLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSL
General information:
TITO was launched using:
RESULT:
Template:
3V20.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6801 for 136 contacts (-50.0/contact) +
2D Compatibility (PS) -4788 + (NN) -74 + (LL) 48
1D Compatibility (HY) -3200 + (ID) 850
Total energy: -15665.0 ( -115.18 by residue)
QMean score : 0.327
(partial model without unconserved sides chains):
PDB file :
Tito_3V20.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V20-query.scw
PDB file :
Tito_Scwrl_3V20.pdb
: