Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLGQPTRAQLAALVDHTLLKPETTRADVAALVAEAAELGVYAVCVSP-SMVPVA--VQAGGVRVAAVTGFPSGKHVSSVKAHEAAAALASGASEIDMV--IDIGAALCGDIDAVRSDIEAV--RAAAAGAVLKVIVESAVLLGQSNAHTLVDACRAAEDAGADFVKTSTGCHPAGGATVRAVEL--MAETVGPRLGVKASGGIRTAADAVAMLNAGATRLGLSGTRAVLDGLS
1N7K Chain:A ((15-232))
-LGSPE--DLASRIDSTLLSPRATEEDVRNLVREASDYGFRCAVLTPVYTVKISGLAEKLGVKLCSVIGFPLGQAPLEVKLVEAQTVLEAGATELDVVPHLSLGP------EAVYREVSGIVKLAKSYGAVVKVILE-APLWDDKTLSLLVDSSRRA---GADIVKTSTGVYTKGGDPVTVFRLASLAKPLG--MGVKASGGIRSGIDAVLAVGAGADIIGTSSAVKVLESFK
General information:
TITO was launched using:
RESULT:
Template:
1N7K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125020 for 1835 contacts (-68.1/contact) +
2D Compatibility (PS) -23623 + (NN) -12030 + (LL) 888
1D Compatibility (HY) -17600 + (ID) 4450
Total energy: -181835.0 ( -99.09 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_1N7K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N7K-query.scw
PDB file :
Tito_Scwrl_1N7K.pdb
: