Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTRSARIVVVSSRAAAGVYTDDCGPIIAGWLEQHGFSSVQPQVVA---DGNPVGEALHDAVNAGVDVIITSGGTGISPTDTTPEHTVAVLDYVIPGLADAIRRSGLPK-VPTSVLSRGVCGVAGRTLIINLPGSPGGVRDGLGVLADVLDHALEQIAGGDHPR
3RFQ Chain:A ((48-182))
---------------------DHSGPLVTELLTEAGF--VVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPRDVTPESTREILDREILGIAEAIRASGLSAGIIDAGLSRGLAGVSGSTLVVNLAGSRYAVRDGMATLNPLAAHIIGQLS------
General information:
TITO was launched using:
RESULT:
Template:
3RFQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103882 for 1046 contacts (-99.3/contact) +
2D Compatibility (PS) -13720 + (NN) -3629 + (LL) 1496
1D Compatibility (HY) -11200 + (ID) 2950
Total energy: -133885.0 ( -128.00 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_3RFQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RFQ-query.scw
PDB file :
Tito_Scwrl_3RFQ.pdb
: