Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTRPDNEPARLRSVAENLAAEAAAFVRGRRAEVFGISRAGDGDGAVRAKSSPTDPVTVVDTDTERLLRDRLAQLRPGDPILGEEGGGPADVTATPSDRVTWVLDPIDGTVNFVYGIPAYAVSIGAQVGGITVAGAVADVAARTVYSAATGLGAHLTDERGRHVLRCTGVDELSMALLGTGFGYSVRCREKQAELLAHVVPLVRDVRRIGSAALDLCMVAAGRLDAYYEHGVQVWDCAAGALIAAEAG--ARVLLSTPRAGGAGLVVVAAAPGIADELLAALQRFNGLEPIPD |
3T0J Chain:A ((26-238)) | -----------------------------------IKQLMEQNLT------PNDLVTNVDKATEDFIFDTILETYPNHQVLGEEGHG-HDIDT--SKGTVWVVDPIDGTLNFVHQQENFAISIGIYIDGKPYAGFVYDVMADVLYHAKVGEGAY----RGSQPLKPLNDSNLRQSIIGINPNW--LTKPILGEIFKEIVNDSRSARAYGSAALEIVSVATGNLEAYMTPRLQPWDFAGGLVILYEVNGQASNLLGEP----------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3T0J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -90094 for 1572 contacts (-57.3/contact) +
2D Compatibility (PS) -22091 + (NN) -8264 + (LL) 5532
1D Compatibility (HY) -12000 + (ID) 3850
Total energy: -130767.0 ( -83.19 by residue)
QMean score : 0.259
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