Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKRLWVGVVSIFPEMFRAISDYGITSRAVKQGLLTLTCWNPRDYTEDRHQTVDDRPFGGGPGMVMKIKPLEGALADARQAAGGRKAKVIYLSPQGRQLTQAGVRELAEEEALILIAGRYEGIDERFIEEHVDEEWSIGDYVLSGGELPAMVLVDAVTRLLPGALGHADSAEEDSFTDGLLDCPHYTRPEVYADKRVPEVLLSGNHEHIRRWRLQQALGRTWERRADLLDSRSLSGEEQKLLAEYIRQRDDS
1UAM Chain:A ((21-259))
----MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAI-HTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGKQA--EEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLKE--------
General information:
TITO was launched using:
RESULT:
Template:
1UAM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127091 for 1730 contacts (-73.5/contact) +
2D Compatibility (PS) -26008 + (NN) -12624 + (LL) 992
1D Compatibility (HY) -30400 + (ID) 7600
Total energy: -202731.0 ( -117.19 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_1UAM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UAM-query.scw
PDB file :
Tito_Scwrl_1UAM.pdb
: