Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELG-LGPALAATAIP-THELRYIDQSGATVWSEPRGV--EAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIE-ERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQ------------------RPLSHG----GITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPMVDRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARNADVAAALREYEEARRPTANKIILANREREKEEWAAASRPKTEKSAALEAITGSYRNQVERPR |
| 3ALJ Chain:A ((16-339)) | --------VAGGGFAGLTAAIALKQNGW-DVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYE----------TWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARA-LG---VDISVNSEAVAADPVGRLTLQT------GEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSP---CNENELYLGLMAPAADPRGSSVPIDLEVWVEMFPF-----------------LEPCL----------IEAAKLKT-----ARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSVEDALVAWETRIRPITDRC----------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3ALJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -158795 for 2486 contacts (-63.9/contact) +
2D Compatibility (PS) -31707 + (NN) -10105 + (LL) 6684
1D Compatibility (HY) -22400 + (ID) 5100
Total energy: -221423.0 ( -89.07 by residue)
QMean score : 0.403
|
|
|