Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNLILTAMLAMASLFGMAAQADDYTAGKEYVELSSPVPVSQPGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALF--GGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVVNGKYRFDIGSAGGPEETLKLADYLIEKERAAAKK
1BED Chain:A ((3-178))
------------------------FKEGEHYQVLKTPASSSPV----VSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVVNNRYLVQGQSVKSLDEYFDLVNYLL---------
General information:
TITO was launched using:
RESULT:
Template:
1BED.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113808 for 1284 contacts (-88.6/contact) +
2D Compatibility (PS) -19042 + (NN) -7948 + (LL) 3708
1D Compatibility (HY) -9600 + (ID) 2550
Total energy: -149240.0 ( -116.23 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_1BED.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BED-query.scw
PDB file :
Tito_Scwrl_1BED.pdb
: