Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQMPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV
3S8L Chain:A ((2-102))
-----------------------------------------------------EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQV---------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3S8L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56722 for 680 contacts (-83.4/contact) +
2D Compatibility (PS) -10821 + (NN) -7013 + (LL) 5496
1D Compatibility (HY) -14000 + (ID) 5000
Total energy: -88060.0 ( -129.50 by residue)
QMean score : 0.336
(partial model without unconserved sides chains):
PDB file :
Tito_3S8L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S8L-query.scw
PDB file :
Tito_Scwrl_3S8L.pdb
: