Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NLYQFKNMIKCTVPSRSWWDFADYGCYCGRGGSGTPVDDLDRCCQVHDNCYNEAEKISGCWPYFKTYSYECSQGTLTCKGDNNACAASVCDCDRLAAICFAGAPYNDNNYNIDLKARCQ
1MF4 Chain:A ((1-118))
NLYQFKNMIQCTVPSRSWADFADYGCYCGKGGSGTPVDDLDRCCQTHDNCYNEAENISGCRPYFKTYSYECTQGTLTCKGDNNACAASVCDCDRLAAICFAGAPYNDANYNIDLKARC-
General information:
TITO was launched using:
RESULT:
Template:
1MF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68673 for 866 contacts (-79.3/contact) +
2D Compatibility (PS) -12941 + (NN) -8255 + (LL) 120
1D Compatibility (HY) -15200 + (ID) 5500
Total energy: -110449.0 ( -127.54 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_1MF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MF4-query.scw
PDB file :
Tito_Scwrl_1MF4.pdb
: