Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
1PLL Chain:A ((1-166))
MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG---YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGI-YIETSAKTRQGVEDAFYTLVREIRQH-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1PLL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78777 for 1198 contacts (-65.8/contact) +
2D Compatibility (PS) -16607 + (NN) -3131 + (LL) 2160
1D Compatibility (HY) -21200 + (ID) 7150
Total energy: -124705.0 ( -104.09 by residue)
QMean score : 0.357
(partial model without unconserved sides chains):
PDB file :
Tito_1PLL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PLL-query.scw
PDB file :
Tito_Scwrl_1PLL.pdb
: