Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHENA--AWLDGQRLPPQGYAADE
1NJS Chain:A ((3-200))
--VAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKICWV--------------
General information:
TITO was launched using:
RESULT:
Template:
1NJS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145641 for 1593 contacts (-91.4/contact) +
2D Compatibility (PS) -21871 + (NN) -11257 + (LL) 352
1D Compatibility (HY) -18000 + (ID) 4150
Total energy: -200567.0 ( -125.91 by residue)
QMean score : 0.734
(partial model without unconserved sides chains):
PDB file :
Tito_1NJS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NJS-query.scw
PDB file :
Tito_Scwrl_1NJS.pdb
: