Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMVESLVQKLAHG
4F2P Chain:A ((17-247))
MKIGIIGAMEEEVTLLRDKIDNRQTITLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLASTLKVGDIVVSDETRYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAESCIRELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPDAVAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSTLMVETLVQKLAH-
General information:
TITO was launched using:
RESULT:
Template:
4F2P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -177318 for 2084 contacts (-85.1/contact) +
2D Compatibility (PS) -25270 + (NN) -17407 + (LL) -172
1D Compatibility (HY) -33200 + (ID) 11050
Total energy: -264417.0 ( -126.88 by residue)
QMean score : 0.784
(partial model without unconserved sides chains):
PDB file :
Tito_4F2P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F2P-query.scw
PDB file :
Tito_Scwrl_4F2P.pdb
: