Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPVSGHTG
1FXU Chain:A ((4-284))
---GYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGQNPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDT---GKANHEEVLEAGKQAAQKLEQFVSLLMASIPV-----
General information:
TITO was launched using:
RESULT:
Template:
1FXU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -193010 for 2354 contacts (-82.0/contact) +
2D Compatibility (PS) -30001 + (NN) -17133 + (LL) 192
1D Compatibility (HY) -40000 + (ID) 13800
Total energy: -293752.0 ( -124.79 by residue)
QMean score : 0.773
(partial model without unconserved sides chains):
PDB file :
Tito_1FXU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FXU-query.scw
PDB file :
Tito_Scwrl_1FXU.pdb
: