Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPLAAVSLGLLLLALLLLLRHLGWGLVTIFWFEYVLQPVHNLIMGDTKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQGPSSPDKS
3HVK Chain:A ((3-215))
---------------------------------------------DTKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQGP------
General information:
TITO was launched using:
RESULT:
Template:
3HVK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146281 for 1829 contacts (-80.0/contact) +
2D Compatibility (PS) -23243 + (NN) -9876 + (LL) 4484
1D Compatibility (HY) -32800 + (ID) 10650
Total energy: -218366.0 ( -119.39 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_3HVK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HVK-query.scw
PDB file :
Tito_Scwrl_3HVK.pdb
: