Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE |
| 4M9J Chain:A ((10-335)) | ---------TLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTS-----PKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPS-----EYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHA----FTINKYTIRPL-VTGVAGEPLPVDSEKDIFDY----YREPKDRSE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4M9J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -123284 for 2280 contacts (-54.1/contact) +
2D Compatibility (PS) -33140 + (NN) -14429 + (LL) 1568
1D Compatibility (HY) -40000 + (ID) 15300
Total energy: -224585.0 ( -98.50 by residue)
QMean score : 0.704
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