Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGSLQPDAGNASWNGTEAPGGGARATPYSLQVTLTLVCLAGLLMLL----TVFGNVLVIIAVFTSRALKAPQNLFLVSLASADILVATLVIPFSLANEVM-GYWYFGKAWCEIYLALDVLFCTSSIVHLCAISLDRYWSI---TQAIEYNLKRTPRRIKAIIITVWVISAVISFP-PLISIEKKGGGGGPQPAEPRCEINDQKW--YVISSCIGSFFAPCLIMILVY-VRIYQIAKRRTRVPPSRRGPD---AVAAPPGGTERRPNGLGPERSAGPGGAEAEPLPTQLNGAPGEPAPAGPRDTDALDLEESSSSDHAERPPGPRRPERGPRGKGKARASQVKPGDSLPRRGPGATGIGTPAAGPGEERVGAAKASRWRGRQNREKRFTFVLAVVIGVFVVCWFPFFFTYTLTAVGC-----SVPRTLFKFFFWFGYCNSSLNPVIYTIFNHDFRRAF-KKILCRGDRKRIV |
| 4IB4 Chain:A ((32-414)) | ---------------------------------------AALLILMVIIPTIGGNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMPIALLTIMFEAMWPLPLVLCPAWLFLDVLFSTASIWHLCAISVDRYIAIKKPIQANQYN-SRATAFIK--ITVVWLISIGIAIPVPIKGIET---N----PNNITCVLTKERFGDFMLFGSLAAFFTPLAIMIVTYFLTIHALQKKAADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQK-----------------KDFR--HGFDILVGQIDD------ALKLANEGKVKEAQAAAEQLKTTRN-------------------------AYIQKYLQTISNEQRASKVLGIVFFLFLLMWCPFFIT-NITLVLCDSCNQTTLQMLLEIFVWIGYVSSGVNPLVYTLFNKTFRDAFGRYITCNYR----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4IB4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -151140 for 2468 contacts (-61.2/contact) +
2D Compatibility (PS) -34340 + (NN) 5618 + (LL) 1488
1D Compatibility (HY) -40800 + (ID) 6000
Total energy: -225174.0 ( -91.24 by residue)
QMean score : 0.166
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