Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEECWVTEIANGSKDGLDSNPMKDYMILSGPQKTAVAVLCTLLGLLSALENVAVLYLILSSHQLRRKPSYLFIGSLAGADFLASVVFACSFVNFHVFHGVDSKAVFLLKIGSV--TMTFTASVGSLLLTAIDRYLCLRYPPSYKALLTRGRALVTLGIMWVLSALVSYLPLM--GWT--------------CCPRPCSELFPLIPNDYLLSWLLFIAFLFSGIIYTYGHVLWKAHQHVASLSGHQDRQVPGMARMRLDVRLAKTLGLVLAVLLICWFPVLALMAHSLATTLSDQVKKAFAFCSM--LCLINSMVNPVIYALRSGEIRSSAHHCLAHWKKCVRGLGSEAKEEAPRSSVTETEADGKITPWPDSRDLDLSDC |
2YCX Chain:A ((9-294)) | ------------------------------QWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQ-TLTNLFITSLACADLVVGLL-VVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASS--IIS--FYIPLLI--MIFVALRVYREAKEQIRKIDRASKRKRVMLMR---EHKALKTLGIIMGVFTLCWLPFFLV---NIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFK------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -207613 for 1942 contacts (-106.9/contact) +
2D Compatibility (PS) -27426 + (NN) -12494 + (LL) 5036
1D Compatibility (HY) -29600 + (ID) 4000
Total energy: -276097.0 ( -142.17 by residue)
QMean score : 0.225
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