Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MCFSPILEINMQSESNITVRDDIDDINTNMYQPLSYPLSFQVSLTGFLMLEIVLGLGSNLTVLVLYCMKSNLINSVSNIITMNLHVLDVIICVGCIPLTIVILLLSLESNTALICCFHEACVSFASVSTAINVF---AITLDRYDISVKP--ANRILTMGRAVMLMISIWIFSFFSFLIPFIEVNFFSLQSGNTWENKT---------LLCVSTNEYYTELGMYYHLLVQIPIFFFTVVVMLITYTKILQALNIRIGTRFSTGQKKKARKKKTISLTTQHEATDMSQSSGGRNVVFGVRTSVSVIIALRRAVKRHRERRERQKRVFRMSLLIISTFLLCWTPISVLNT-TILCLGPSDLLVKLRLCFLVMAYGTTIFHPLLYAFT----RQKFQKVLKSKMKKRVVSIVEADPLPNNAVIHNSWIDPKRNKKITFEDSEIREKCLVPQVVTD |
| 4UG2 Chain:A ((18-309)) | ----------------------------------------------------VLAILGNVLVCWAVWLNSNLQN-VTNYFVVSAAAADILVGVLAIPFAIAI---STGFCAACHGCLFIAC--FVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWN----NCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFN-------FFACVLVPLL--------LMLGVYLRIFLAARRQL------------ARSTLQKE---------VHAAKSLAI-------------------------IVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLR------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4UG2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -227435 for 1984 contacts (-114.6/contact) +
2D Compatibility (PS) -25971 + (NN) -202 + (LL) 13776
1D Compatibility (HY) -26000 + (ID) 3850
Total energy: -269682.0 ( -135.93 by residue)
QMean score : 0.195
|
|
|