Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAAISTSIPVISQPQFTAMNEPQCFYNESIAFFYNRSGKHLATEWNTVSKLVMGLGITVCIFIMLANLLVMVAIYVNRRFHFPIYYLMANLAAADFFAGLAYFYLMFNTGPNTRRLTVSTWLLRQGLIDTSLTAS-VANLLAIAIERHITV-FRMQLHTRMSNRRVVVVIVVIWTMAIVMGAIPSVGWN-CICDIENCSN--------MAPLYSD----SYLVFWAIFN--LVTFVVMVVLYAHIFGYVRQRTMRMSRHSSGPRRNRDTMMSLL---KTVVIVLGAFIICWTPGLVLLLLDVCCPQCDVLAYEKFFL--LLAEFNSAMNPIIYSYRDKEMSATFRQILCCQRSENPTGPTEGSDRSASSLNHTILAGVHSNDHSVV |
| 2YDV Chain:A ((6-303)) | ------------------------------------------------SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGV--LAIPFAIAISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQ--------STLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAAAENLYFQ---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -248725 for 1973 contacts (-126.1/contact) +
2D Compatibility (PS) -27378 + (NN) -11550 + (LL) 3368
1D Compatibility (HY) -31200 + (ID) 3900
Total energy: -319385.0 ( -161.88 by residue)
QMean score : 0.233
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