Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVIMGQCYYNETIGFFYNNSGKELSSHWRPKDVVVVALGLTVSVLVL---LTNLLVIAAIASNRRFHQPIYYLLGNLAAADLFAGVAYL-FLMFHTGPRT---ARLSLEGWFLRQGLLDTSLTASVATLLAIAVERHRSVMA-VQLHSRLPRGRVVMLIVGVWVAALGLGLLP--------AHSWHCLC-ALDRCSRMAPLLSRSYLAVWALSSLLV-FLLMVAVYTRIFFYVRRRVQRMAEHVSCHPRYRETTLSLVKTVVIILGAFVVCWTPGQVVLLLDGLGCESCNVLAVEKYFLL--LAEANSLVNAAVYSCRDAEMRRTFRRLLCCACLRQSTRESVHYTSSAQGGASTRIMLPENGHPLMDSTL |
| 4LDL Chain:A ((178-463)) | ------------------------------DEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVL---CVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDF--FTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQ----------KFALKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI---QDNLIRKEVYILLNWIGYVNSGFNPLIY-CRSPDFRIAFQELL---CL------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -233396 for 1839 contacts (-126.9/contact) +
2D Compatibility (PS) -27396 + (NN) -20145 + (LL) 4292
1D Compatibility (HY) -29200 + (ID) 4350
Total energy: -310195.0 ( -168.68 by residue)
QMean score : 0.281
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