Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNPFHASCWNTSAELLNKSWNKEFAYQTASVVDTVILPSMIGIICSTGLVGNILIVFTIIRSRK-KTVPDIYICNLAVADLV-HIVGMPFLIHQWARGGEWVFGGPLCTIITSLDTCNQFACSAIMTVMSVDRYFALVQPFRLTRWRTRYKTIRINLGLWAASFILA-LPVWVY------SKVIKFKDGVESCAFDLTSPDDVLWYTLYLTITTFFFPLPLILVCYILILCYTWEMYQQNKDA-RCCNPSVPKQRVM-----KLTKMVLVLVVVFILSAAPYHVIQLVNLQMEQ--PTLAFYVGYYLSICLSYASSSINPFLYILLSGNFQ---KRLPQIQRRATEKEINNMGNTLKSHF |
| 2YCW Chain:A ((3-299)) | ------------AELLSQQWEAGMSLLMALVVLLIV-------------AGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRG-TWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRA-----YAIASSIISFYIPL-LIMIFVAL------RVYREAKEQIRKIDRASKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNW----LGYANSAMNPIIYC-RSPDFRKAFKRLLAF-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -204836 for 1971 contacts (-103.9/contact) +
2D Compatibility (PS) -27606 + (NN) -931 + (LL) 3784
1D Compatibility (HY) -30000 + (ID) 4400
Total energy: -263989.0 ( -133.94 by residue)
QMean score : 0.285
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