Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNSTLFSQVENHSVHSNFSEKNAQLLA-FENDDCHLPLAMIFTLALAYG-AVIILGVSGNLALIIIILKQKEMRNVTNILIVNLSFSDLLVAIMCLPFTFVYTLMDHWVFGEAMCKLNPFVQCVSITVSIFSLVLIAVERHQLIINP-RGWRPNNRHAYVGIAVIWVLAVASSLPFLI-YQVMTDEPFQ-NVTLDAYKDKYVCFDQFPSDSHRLSYTTLLLVLQYFGPLCFIFICYFKIYIRLKRRNNMMDKMRDNKYRSSETKRINIMLLSIVVAFAVCWLPLTIFNTVFDWNHQIIATCNHNLLFL-LCHLTAMISTCVNPIFYGFLNKNFQRDLQFFFNFCDFRSRDDDYETIAMSTMHTDVSKTSLKQASPVAFKKINNNDDNEKI |
3DQB Chain:A ((1-326)) | MNGT-----EGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPH--------EETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTR---MVIIMVIAFLICWLPYAGV-AFYIFTHQ---GSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQF-RNCMVTTLCCGKN------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DQB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -259028 for 2600 contacts (-99.6/contact) +
2D Compatibility (PS) -32557 + (NN) -3968 + (LL) 4208
1D Compatibility (HY) -36400 + (ID) 4300
Total energy: -332045.0 ( -127.71 by residue)
QMean score : 0.219
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