Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLTLNKTDLIPASFILNGVPGLEDTQLWISFPF------CSMYVVAMVG---NCGLLYLIHYEDALHKPMYYFLAMLSFTDLVMCSSTIPKALCIFWFHLKDIGFDECLVQMFFTHTFTGMESGVLMLMALDRYVAICYPLRYSTILTNPVIAKVGTATFLRGVLLIIPFTFLTKLLP---YCRGNILPHTYCDHMSVAKLSCGNVKVNAIYGLMVALLIWGFDILCITNSYTMILRAVVSLSSADARQKAFNTCTAHICAIVFS-------YTPAFFSFFSHRFGEHIIPPSCHIIVANIYLLLPPTMNPIVYGVKTKQIRDCVIRILSGSKDTKSYSM |
| 3CAP Chain:A ((15-326)) | ----NKTGVVRSPF--------EAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVK-------EAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQ-GSDFGP--IFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3CAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -210683 for 2139 contacts (-98.5/contact) +
2D Compatibility (PS) -29643 + (NN) -8234 + (LL) 1744
1D Compatibility (HY) -24000 + (ID) 3350
Total energy: -274166.0 ( -128.17 by residue)
QMean score : 0.147
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