Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSGENNSSVTEFILAGLSEQPELQLPLFLLFLGIYVVTVVGNLGMTTLIWLSSHLHTPMYYFLSSLSFIDFCHSTVITPKMLVNFVTEKNIISYPECMTQLYFFLVFAIAECHMLAAMAYDRYMAICSPLLYSVIISNKACFSLILGVYI----IGLV-------CASVHTGCMFRVQFCKFDLINHYFCDLLPLLKLSCSSIYVNKLLILCVGAFNILVPSLTILCSYIFI-IASILHIRSTEGRSKAFSTCSSHMLA---VVIFFGSAAFMYLQPSSIS-------SMDQGKVSSVFYTIIV----PMLNPLIYSLRNKDVHVSLKKMLQRRTLL |
| 2YDO Chain:A ((14-308)) | -------------------------------LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEG-KAHSQGCGEGQVACLFEDVVPMNYM----VYFN--FFACV-----LVPLLLMLGVYLRIFLAARRQLKQMES------TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLR |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -268584 for 1915 contacts (-140.3/contact) +
2D Compatibility (PS) -25531 + (NN) 3059 + (LL) 3120
1D Compatibility (HY) -26400 + (ID) 3400
Total energy: -317736.0 ( -165.92 by residue)
QMean score : 0.254
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