Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | METTMGFMDDNATNTSTSFLSVLNPHGAHATSFPFNFSYSDYDMPLDEDEDVTNSRTFFAAKIVIGMALVGIMLVCGIGNFIFIAALVRYKKLRNLTNLLIANLAISDFLVAIVCCPFEMDYYVVRQLSWEHGHVLCTSVNYLRTVSLYVSTNALLAIAIDRYLAIVHPLRPR--MKCQTATGLIALVWTVSILIA---IPSAYFTTETVLVIVKSQEKIFCGQIWPVDQQLYYKSYFLFIFGIEFVGPVVTMTLCYARISRELWFKAVPGFQTEQIRKRLRCRRKTVLVLM-----------CILTAYVLCWAPFYGFTIV----RDFFPTVFVKEKHYLTAFYIVECIAMSNSMINTLCFVTVKNDTVKYFKKIMLLHWKASYNGGKSSADLDLKTIGMPATEEVDCIRLK |
| 2Y01 Chain:A ((10-300)) | ----------------------------------------------------------WEAGMSLLMALVVLLIVAG--NVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGAT-LVVRG-TWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFV-------TNRAYAIASSIISFYIPLLIMIFVALRVYRE---------AKEQ-----------SRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWL---------FVAFNWLGYANSAMNPIIYCR-SPDFRKAFKRLLA----------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2Y01.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -247790 for 1871 contacts (-132.4/contact) +
2D Compatibility (PS) -25644 + (NN) 77 + (LL) 7860
1D Compatibility (HY) -30400 + (ID) 4250
Total energy: -300147.0 ( -160.42 by residue)
QMean score : 0.246
|
|
|