Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLRLFYFSAIIASVILNFVGIIMNLFITVVNCKTWVKSHRISSSDRILFSLGITRFLMLGLFLVNTI-YFVSSNTERSVY-LSAFFVLCFMFLDSSSVWFVTLLNILYCVKITNFQHSVFLLLKRNISPKIPRLLLACVLISAFTTCLY-ITLSQASPFPELVTTRNNTSF--N-ISE----GIL-SLVVSLVLSSSLQFIINVTSASLLIHSLRRHIQKMQKNATGFWNPQTEAHVGAMKLMV----YFLILYIPYSVATLVQYLPFYA---GMDMGTKSICLIFATLYSPGHSVLIIITHPKLKTTAKKILCFKK |
| 2KS9 Chain:A ((35-323)) | --------WAAAYTVIVVTSVVGNVVVMWIILAH---KRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNE-WYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHP---LQPRLSATAT---KVVICVIWVLALLLAFPQGYYSTT------ETM-PSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSD--RYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCP |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KS9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -193202 for 2048 contacts (-94.3/contact) +
2D Compatibility (PS) -27433 + (NN) -4021 + (LL) 1720
1D Compatibility (HY) -14400 + (ID) 1400
Total energy: -238736.0 ( -116.57 by residue)
QMean score : 0.205
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