Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVQCGQVMQLMAPCMPYLAGAPGMTPYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAGFPAVDFSRASALPAACGLSISFTIAPNMDCNQVTEELRI
1AFH Chain:A ((1-93))
AISCGQVASAIAPCISYARGQG-SGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN-----
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97936 for 764 contacts (-128.2/contact) +
2D Compatibility (PS) -9757 + (NN) -4020 + (LL) 516
1D Compatibility (HY) -4800 + (ID) 1950
Total energy: -117947.0 ( -154.38 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: