Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQPSCAAQLTQLAPCARVGVAPAPGQPLPAPPAECCSALGAVSH----------DCACGT----------LDIINSLPAKCGLPRVTCQ
1AFH Chain:A ((2-78))
--ISCGQVASAIAPCISYARGQ---G--SGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVS-----
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19951 for 386 contacts (-51.7/contact) +
2D Compatibility (PS) -6076 + (NN) -6757 + (LL) 628
1D Compatibility (HY) -3200 + (ID) 850
Total energy: -36206.0 ( -93.80 by residue)
QMean score : 0.236
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: