Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QNIC--PRV--NRIVPPCVAYGL----GRAPI----APCCRALNDLRFVNTRNLRRAACRCLVGVVSRN---PGLTQN-------PRFQNIPRDCRNTFVRPFWWRPRIQCGRINLTDKLIYLDAEE
1HSS Chain:A ((5-124))
--MCYPGQAFQVPALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHISE-------WCRCGALYSMLDSMYKEHGAFPRCRREVVKLTAASITAVCRLPIVV----DASGDGAYV-CKDVAAYPDA--
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60230 for 589 contacts (-102.3/contact) +
2D Compatibility (PS) -8790 + (NN) -2570 + (LL) 932
1D Compatibility (HY) -2800 + (ID) 900
Total energy: -74358.0 ( -126.24 by residue)
QMean score : 0.301
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: