Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTCGQVQSRMTPCLPYLTGSG--PLGRCCGGVKGLLGAAKTPADRKTVCSCLKSAAGSIGGINVRKAAGLPNMCGVNIPYQISPSTDCTKVQ
1AFH Chain:A ((2-93))
ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69048 for 741 contacts (-93.2/contact) +
2D Compatibility (PS) -9254 + (NN) -3090 + (LL) 0
1D Compatibility (HY) -7200 + (ID) 2300
Total energy: -90892.0 ( -122.66 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: