Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCGQVTQNVAPCFNYVKNG---GA-------------------VPAACCNGVRNLNSQAKTTADRQQTCNCLKNAAGSIP--G-L-------NPSLAAGLPGKCGVSVPYKISTSTNCATVK
1PSY Chain:A ((25-122))
-------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMRQT--------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20082 for 503 contacts (-39.9/contact) +
2D Compatibility (PS) -6468 + (NN) -1056 + (LL) 1588
1D Compatibility (HY) -3600 + (ID) 800
Total energy: -30418.0 ( -60.47 by residue)
QMean score : 0.328
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: