Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-VTCS--PAQLSSCVSAITSSTP-PSKLCCSKIKEQKPCLCQYLKNPN------------LQKF--INTPNARKVASTCGTPFP-------KC----
1FK5 Chain:A ((1-93))
AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNA----ARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN
General information:
TITO was launched using:
RESULT:
Template:
1FK5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14484 for 360 contacts (-40.2/contact) +
2D Compatibility (PS) -6530 + (NN) -1266 + (LL) 444
1D Compatibility (HY) -3600 + (ID) 800
Total energy: -26236.0 ( -72.88 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_1FK5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FK5-query.scw
PDB file :
Tito_Scwrl_1FK5.pdb
: