Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QAGGCASQL---GNLNVCAPYVV------PGAVNT-------NPSQECCAALSGVNHDCMCNTLRVA----------------------SQLPSSCNLAA-LNCGN
1SM7 Chain:A ((1-105))
QPQKCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCP-
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53486 for 431 contacts (-124.1/contact) +
2D Compatibility (PS) -7080 + (NN) -1201 + (LL) -80
1D Compatibility (HY) -4400 + (ID) 950
Total energy: -67197.0 ( -155.91 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: